This is the Linux app named Drug Extraction to run in Linux online whose latest release can be downloaded as DrugExtractionStandalone.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
Download and run online this app named Drug Extraction to run in Linux online with OnWorks for free.
Follow these instructions in order to run this app:
- 1. Downloaded this application in your PC.
- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
- 3. Upload this application in such filemanager.
- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.
- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
- 6. Download the application, install it and run it.
SCREENSHOTS
Ad
Drug Extraction to run in Linux online
DESCRIPTION
Drug name recognition and normalisation/grounding to DrugBank ids and standard names.Package provides 2 taggers:
1. DrugTagger - CRF-based with DrugBank presence feature (see feature set for details).
2. DrugnameGazetteer - gazetteer/dictionary-based. Dictionary created from DrugBank.ca database.
Both taggers include grounding/normalisation to DrugBank ids and standard names.
Feature set:
Word, Word-1, Word+1, Word-1_Word, Word_Word+1, DrugBankPresence, POS
DrugBankPresence feature indicates the presence of the drug name in the DrugBank.
Using CONLL-Evaluation:
processed 32065 tokens with 3656 phrases; found: 3251 phrases; correct: 2786.
accuracy: 95.25%; precision: 85.70%; recall: 76.20%; FB1: 80.67
Using GATE Corpus Benchmark:
Strict: P: 0.65 R: 0.73 F1: 0.69
Lenient: P: 0.74 R: 0.84 F1: 0.78
The details of how to reproduce evaluation, see README.
To use standalone version for tagging download DrugExtractionStandalone.tar.gz from Files.
User interface
Console/Terminal
Programming Language
Java
This is an application that can also be fetched from https://sourceforge.net/projects/drug-extraction/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
