This is the Linux app named Exact Subgraph Matching Algorithm whose latest release can be downloaded as esm-1.0.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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Exact Subgraph Matching Algorithm
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DESCRIPTION
The subgraph matching problem (subgraph isomorphism) is NP-complete. We designed a simple exact subgraph matching (ESM) algorithm for dependency graphs using a backtracking approach. The total worst-case algorithm complexity is O(n^2 * k^n) where n is the number of vertices and k is the vertex degree.
We have demonstrated the successful usage of our algorithm in three biomedical relation and event extraction applications: BioNLP 2011 shared tasks on event extraction, Protein-Residue association detection and Protein-Protein interaction identification.
This Java implementation implements our ESM algorithm. See README file: https://sourceforge.net/projects/esmalgorithm/files/
If you use our ESM implementation to support academic research, please cite the following paper:
Haibin Liu, Vlado Keselj, and Christian Blouin. Exploring a Subgraph Matching Approach for Extracting Biological Events from Literature. Computational Intelligence, 2013.
Audience
Science/Research
Programming Language
Java
This is an application that can also be fetched from https://sourceforge.net/projects/esmalgorithm/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
