This is the Linux app named GenoCline whose latest release can be downloaded as GenoCline-1.5.zip. It can be run online in the free hosting provider OnWorks for workstations.
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SCREENSHOTS
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GenoCline
DESCRIPTION
Identification of clines from allele frequency or genome-wide databases. Angular transformation. Sigmoid function.
Parameterization of a cline: orientation, Pearson’s product-moment correlation coefficient, linear and sigmoid regression and coefficient of determination. Graphical representation of the cline. Confidence limits.
Spatial autocorrelation. Moran's index.
Isolation by distance. Exponential regression. Correlation Fst/Distance.
Centroid method.
Cline's expected vs. predicted heterozygosity.
MDS. Sammon projection.
Geographical distances. Fst distances.
Export data to Arlequin, Phylip, Past and Poptree.
User-friendly input data.
Features
- Identification of clines from allele frequency or genome-wide databases. Angular transformation. Sigmoid function.
- Parameterization of a cline: orientation, Pearson’s product-moment correlation coefficient, linear and sigmoid regression and coefficient of determination.
- Graphical representation of the cline. Confidence limits.
- Spatial autocorrelation. Moran's index. Isolation by distance. Exponential regression. Correlation Fst/Distance. Centroid method. Cline's expected vs. predicted heterozygosity. MDS. Sammon projection. Geographical distances. Fst distances.
- Export data to Arlequin, Phylip, Past and Poptree.
- User-friendly input data.
Audience
Science/Research, Education
User interface
Java Swing
Programming Language
Java
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/genocline/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
