This is the Linux app named Genome Microsatellite Analyzing Tool whose latest release can be downloaded as gmatoV1.2Build20130106.zip. It can be run online in the free hosting provider OnWorks for workstations.
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Genome Microsatellite Analyzing Tool
DESCRIPTION
The increasing sequence availability of more and more huge whole genomes (>1G) defeated currently existing SSR analyzing tools. Genome-wide Microsatellite Analyzing Tool (GMATo) is a novel powerful program for faster SSR mining at any length, any size,and comprehensive statistical analysis at genome aspect, especially designed for huge genome based on Perl scripts. Only one input file is required which contains DNA sequences in raw fasta format and output files in tabular format list all SSR loci information and statistical distribution at four biologist interested classifications. GMATo also has easy and graphical user interface scripted in Java and command line interface in Perl, either running in Windows, Linux and Mac etc. platforms with easily customized parameters control for biologists and bio-informatician. Software GMATo is a better tool for SSR characterization in a huge genomecite this paper: Wang X. et al , Bioinformation [2013, 9(10):541-544]
This is an application that can also be fetched from https://sourceforge.net/projects/gmato/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
