This is the Linux app named Hamstr to run in Linux online whose latest release can be downloaded as hamstr.v13.2.6-bin-lib.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
Download and run online this app named Hamstr to run in Linux online with OnWorks for free.
Follow these instructions in order to run this app:
- 1. Downloaded this application in your PC.
- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
- 3. Upload this application in such filemanager.
- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.
- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
- 6. Download the application, install it and run it.
Hamstr to run in Linux online
Ad
DESCRIPTION
HaMStR has moved to https://github.com/bionf/hamstr where it is now part of the HaMStR-OneSeq package.HaMStR is a profile hidden Markov model based tool for a directed ortholog search in EST or protein sequence data. The program takes a pre-defined core group of orthologous sequences (core orthologs) and a set of sequences from a search taxon as input. HaMStR then combines in a two-step strategy a pHMM based search and a reverse search via BLAST to extend the core ortholog group with novel sequences from the search taxon.
Audience
Science/Research
Programming Language
Perl
This is an application that can also be fetched from https://sourceforge.net/projects/hamstr/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
