This is the Linux app named Hamstr whose latest release can be downloaded as hamstr.v13.2.6-bin-lib.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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Hamstr
DESCRIPTION:
HaMStR has moved to https://github.com/bionf/hamstr where it is now part of the HaMStR-OneSeq package.
HaMStR is a profile hidden Markov model based tool for a directed ortholog search in EST or protein sequence data. The program takes a pre-defined core group of orthologous sequences (core orthologs) and a set of sequences from a search taxon as input. HaMStR then combines in a two-step strategy a pHMM based search and a reverse search via BLAST to extend the core ortholog group with novel sequences from the search taxon.
Audience
Science/Research
Programming Language
Perl
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/hamstr/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.