This is the Linux app named Introminer whose latest release can be downloaded as Arath1.gb.zip. It can be run online in the free hosting provider OnWorks for workstations.
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Introminer
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DESCRIPTION
Created by Julie Shay and Claudio Slamovits.
Introminer reads a sequence file with genomic data that contains sequence and intron positions in genbank format. It extracts positional and sequence data as well as the intronic sequences and other important parameters to study gene architecture and intron evolution at a genome-wide scale.
Features
- Reads Genbank format sequence files containing genomic data (partial or full genome data)
- Extracts various useful information on introns such as number, size, position in the genes and sequence
- Detects introns with noncanonical borders
- Output includes CDS sequences of all the genes (introns removed)
Audience
Science/Research
User interface
.NET/Mono
Programming Language
Perl
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/introminer/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
