This is the Linux app named Introminer to run in Linux online whose latest release can be downloaded as Arath1.gb.zip. It can be run online in the free hosting provider OnWorks for workstations.
Download and run online this app named Introminer to run in Linux online with OnWorks for free.
Follow these instructions in order to run this app:
- 1. Downloaded this application in your PC.
- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
- 3. Upload this application in such filemanager.
- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.
- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
- 6. Download the application, install it and run it.
Introminer to run in Linux online
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DESCRIPTION
Created by Julie Shay and Claudio Slamovits.Introminer reads a sequence file with genomic data that contains sequence and intron positions in genbank format. It extracts positional and sequence data as well as the intronic sequences and other important parameters to study gene architecture and intron evolution at a genome-wide scale.
Features
- Reads Genbank format sequence files containing genomic data (partial or full genome data)
- Extracts various useful information on introns such as number, size, position in the genes and sequence
- Detects introns with noncanonical borders
- Output includes CDS sequences of all the genes (introns removed)
Audience
Science/Research
User interface
.NET/Mono
Programming Language
Perl
This is an application that can also be fetched from https://sourceforge.net/projects/introminer/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
