This is the Linux app named MANTIS R Package to run in Linux online whose latest release can be downloaded as MANTIS_3.3.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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MANTIS R Package to run in Linux online
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DESCRIPTION
This repository contains the most updated code version of MANTIS, the Multi-locus ANTIgenic Simulator R-package.MANTIS is developed and maintained by the Evolutionary Ecology of Infectious Disease (EEID) research group at the Department of Zoology, University of Oxford, UK.
For theoretical background please refer to 'MANTIS: an R package that simulates multilocus models of pathogen evolution' (https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-015-0598-9 OPEN ACCESS)
At the moment, MANTIS is not available on CRAN.
To build a source package of MANTIS, use the script buildPackage.R
To install MANTIS use 'install.packages(file.tar.gz,type="src",repo=NULL)'
To test use test_V3.3_code.R
Contact the main author of the publication above for further details.
Have fun!
Audience
Science/Research, Education
Programming Language
S/R
This is an application that can also be fetched from https://sourceforge.net/projects/mantis-r-package/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
