This is the Linux app named MatrixMaker whose latest release can be downloaded as RunProject.jar. It can be run online in the free hosting provider OnWorks for workstations.
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MatrixMaker
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DESCRIPTION
Create custom substitution matrices for BLAST protein search.
Easy to use GUI based application.
Audience
Science/Research
User interface
Java Swing
Programming Language
Perl, Java
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/matrixmaker/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.