This is the Linux app named MICA-aligner to run in Linux online whose latest release can be downloaded as mica-GPLv3.zip. It can be run online in the free hosting provider OnWorks for workstations.
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MICA-aligner to run in Linux online
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DESCRIPTION
Latest Code in GitHub:https://github.com/aquaskyline/MICA-aligner
To better utilize MIC-enabled computers for NGS data analysis, we developed a new short-read aligner MICA that is optimized in view of MIC’s limitation and the extra parallelism inside each MIC core. Experiments on aligning 150bp paired-end reads show that MICA using one MIC board is ~4.85 times faster than the CPU-(multi-core)-based BWA-MEM and about the same speed as the GPU-based SOAP3-dp. Furthermore, MICA’s simplicity allows very efficient scale-up when multiple MIC boards are used in a node (3 cards gives a 14-fold speedup over 6-core BWA-MEM).
Audience
Science/Research, Education, Engineering
User interface
Command-line
Programming Language
C++
Database Environment
Flat-file
This is an application that can also be fetched from https://sourceforge.net/projects/mica-aligner/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
