This is the Linux app named MiModD whose latest release can be downloaded as MiModD-0.1.9.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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MiModD
DESCRIPTION
MiModD is a software package for genomic variant identification from next-generation sequencing (NGS) data with optimized usage of system resources and a user-friendly interface. For most model organism genomes it lets the user carry out a complete analysis from unaligned genomic NGS read data to an annotated list of variants on a regular Desktop PC within a few hours. Its user-interface is beginner-friendly and designed to encourage geneticists to analyze NGS data themselves without the help of a trained bioinformatician.
Features
- WGS analysis of model organism genomes even on single PCs and notebooks
- powerful tools for variant filtering and mapping
- integration into an existing Galaxy installation with a single command
- example datasets for testing
- online tutorial and extensive documentation
- platform-specific bundled distributions (many Linux flavours, OS X) to run and test in a pre-configured Galaxy instance without installation
Audience
Science/Research, Advanced End Users
User interface
Web-based, Command-line
Programming Language
Python
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/mimodd/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
