This is the Linux app named MPICorMat whose latest release can be downloaded as MPICorMat_v3.0.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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MPICorMat
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DESCRIPTION
MPICorMat is a parallel tool to construct correlation similarity matrices as part of the procedure to generate gene co-expression networks. This tool takes as input a matrix with the expression values (a float value) for different genes observed from several samples. It is a parallelization of the first module of the RMTGenNet tool (https://github.com/spficklin/RMTGeneNet). RMTGeneNet users can exchange this CCM module by MPICorMat, benefit from its fast computation to generate the similarity
matrix, and then use the similarity matrix as input for the second module (RMM) to
construct the final gene co-expression network.
Audience
Information Technology, Healthcare Industry, Science/Research
User interface
Console/Terminal, Command-line
Programming Language
C++
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/mpicormat/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
