This is the Linux app named NGSReadsTreatment whose latest release can be downloaded as NgsReadsTreatmentGI_v1.2.jar. It can be run online in the free hosting provider OnWorks for workstations.
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NGSReadsTreatment
DESCRIPTION:
NGSReadsTreatment, a computational tool for the removal of duplicated reads in paired-end or single-end datasets. NGSReadsTreatment can handle reads from any platform with the same or different sequence lengths. Using the probabilistic structure Cuckoo Filter, the redundant reads are identified and removed by comparing the reads with themselves. Thus, no prerequisite is required beyond the set of reads. NGSReadsTreatment was compared with other redundancy removal tools in analyzing different sets of reads. The results demonstrated that NGSReadsTreatment was better than the other tools in both the amount of redundancies removed and the use of computational memory for all analyses performed.Note: To run the new version use Java version 11.
This is an application that can also be fetched from https://sourceforge.net/projects/ngsreadstreatment/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.