This is the Linux app named OptimizeSNP whose latest release can be downloaded as Optimize1.0code.zip. It can be run online in the free hosting provider OnWorks for workstations.
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OptimizeSNP
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DESCRIPTION
Program apply linear programming to minimize the number of microarrays and hybridization experiments that need to be undertaken in order to cover most of the predicted expressed SNPs.Dependencies:. 1) mampl.exe must be in system PATH 2) CPLEX 12.2 must be installed. cplexamp.exe must be in system PATH
mampl.exe can be obtained from any program containing AMPL. I obtained AMPL from trial version of MOSEK at http://www.mosek.com/. CPLEX 12.0 can be obtained from http://www-01.ibm.com/software/integration/optimization/cplex-optimizer/. A free acadamic license can be obtained by filling out IBM academic initiative application.
Audience
Science/Research
Programming Language
Perl
Database Environment
Flat-file
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/optimizesnp/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
