This is the Linux app named Pathoscope whose latest release can be downloaded as pathoscope_2.0.6_clinical_pathoscope_1.0.3.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
Download and run online this app named Pathoscope with OnWorks for free.
Follow these instructions in order to run this app:
- 1. Downloaded this application in your PC.
- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
- 3. Upload this application in such filemanager.
- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.
- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
- 6. Download the application, install it and run it.
Pathoscope
Ad
DESCRIPTION
This page is here for archival purpose. Please visit github for the latest version of the software: https://github.com/pathoscopePathoScope takes next-generation sequencing reads from a mixture sample and predicts which genomes are present. We use a Bayesian framework combined with an initial reference-based alignment to assign reads to the correct genome of origin.
Pathoscope 2.0:
Wiki:
http://sourceforge.net/p/pathoscope/wiki/Home/
Tutorial:
http://sourceforge.net/projects/pathoscope/files/pathoscope2.0_v0.02_tutorial.pdf
Clinical Pathoscope version: http://sourceforge.net/p/pathoscope/wiki/clinical_pathoscope/
PathoQC download: http://sourceforge.net/projects/pathoscope/files/pathoqc_v0.1.4.tar.gz/download
Publications: http://www.microbiomejournal.com/content/2/1/33
http://www.biomedcentral.com/1471-2105/15/262
http://genome.cshlp.org/content/23/10/1721
Support:
PS: Please send an email to mani2012 at bu dot edu if you have any questions.
Features
- PathoQC: PathoQC is a quality control and preprocessing standalone program for a high-throughput dataset. Please download PathoQC from http://sourceforge.net/projects/pathoscope/files/pathoqc_v0.1.4.tar.gz/download
- PathoQC Publication: http://la-press.com/article.php?article_id=4828
- Support: https://groups.google.com/d/forum/pathoscope
- Lab Page: http://jlab.bu.edu/software/
This is an application that can also be fetched from https://sourceforge.net/projects/pathoscope/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
