This is the Linux app named PhyCluster whose latest release can be downloaded as JRclient.jar. It can be run online in the free hosting provider OnWorks for workstations.
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PhyCluster
DESCRIPTION
PhyCluster: A fast and stable procedure for sample clustering on oligonucleotide microarrayPhyCluster is an unsupervised clustering workflow for GEO Affymetrix oligonucleotide microarrays. This method could avoid the statistical instabilities in normalization and gene selection steps, which can be used in independent, cross-experiment, or even cross-platform GEO series.
This is an application that can also be fetched from https://sourceforge.net/projects/phycluster/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.