This is the Linux app named PINCIS whose latest release can be downloaded as PINCIS_v12.zip. It can be run online in the free hosting provider OnWorks for workstations.
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PINCIS
DESCRIPTION
PINCIS.pl (PIcs N-/C-terminal Inferred Substrates perl script) is a small, command line tool to designate and analyze PICS (Schilling et al., Nat. Protocols, 2011) data to gain the prime and non-prime site specificity of proteases. Thus, the script filters given peptide lists for library peptides (generated by the digestion protease in the proteomics workflow rather then the protease of interest) and prints out lists of inferred N- and C-terminal cleavage window extensions which can be concurrently used to generate cleavage specificity visualizations like the iceLogo (https://iomics.ugent.be/icelogoserver/create).
Features
- PICS data analysis
- Cleavage window determination
Audience
Other Audience
Programming Language
Perl
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/pincis/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
