This is the Linux app named Pipeline Builder for NGS tools whose latest release can be downloaded as pipeline_builder_20150106-1044-build-baf32e1.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
Download and run online this app named Pipeline Builder for NGS tools with OnWorks for free.
Follow these instructions in order to run this app:
- 1. Downloaded this application in your PC.
- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
- 3. Upload this application in such filemanager.
- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.
- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
- 6. Download the application, install it and run it.
SCREENSHOTS
Ad
Pipeline Builder for NGS tools
DESCRIPTION
Handling with NGS tool configuration files is a real challenge for modern biologists and biotechnologist. To increase productivity, specificity and enhance the data processing, this tool provides a collection of commands already structured, leading the user in building the correct pipeline for the data he has to analyse.
Pipeline Builder is a scripting tool for managing complex NGS analysis pipelines. It helps the user in composing NGS tool commands and composing his own analysis pipeline. It allows for data independent reproducible analysis creating protected environment which separates data from results through variable exportation. It comes as a command-line tool with a wizard menus and step-by-step tutorials.
Pipeline Builder is written in Perl and it is crossplatform.
Features
- NGS pipeline building
- NGS tool parallel calling
- Storaging data without overlapping and redundancy
Audience
Science/Research
User interface
Command-line
Programming Language
Perl
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/pipelinebuilder/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
