This is the Linux app named Pipeline Builder for NGS tools to run in Linux online whose latest release can be downloaded as pipeline_builder_20150106-1044-build-baf32e1.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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Pipeline Builder for NGS tools to run in Linux online
DESCRIPTION
Handling with NGS tool configuration files is a real challenge for modern biologists and biotechnologist. To increase productivity, specificity and enhance the data processing, this tool provides a collection of commands already structured, leading the user in building the correct pipeline for the data he has to analyse.Pipeline Builder is a scripting tool for managing complex NGS analysis pipelines. It helps the user in composing NGS tool commands and composing his own analysis pipeline. It allows for data independent reproducible analysis creating protected environment which separates data from results through variable exportation. It comes as a command-line tool with a wizard menus and step-by-step tutorials.
Pipeline Builder is written in Perl and it is crossplatform.
Features
- NGS pipeline building
- NGS tool parallel calling
- Storaging data without overlapping and redundancy
Audience
Science/Research
User interface
Command-line
Programming Language
Perl
This is an application that can also be fetched from https://sourceforge.net/projects/pipelinebuilder/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
