This is the Linux app named PPIXpress whose latest release can be downloaded as PPIXpress_1.23.zip. It can be run online in the free hosting provider OnWorks for workstations.
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SCREENSHOTS:
PPIXpress
DESCRIPTION:
Although protein-protein interaction networks are an ubiquitous component of modern systems biology, comparatively few efforts have been made to tailor their topology to the actual cellular condition under study. Since a simple reduction of the networks to the subset of expressed genes only scratches the surface of higher organisms’ regulatory capabilities, we propose the advanced method PPIXpress that allows to exploit expression data at the transcript-level and is thus able to also reveal alterations in protein connectivity caused by alternative splicing.
The original publication can be found on https://bioinformatics.oxfordjournals.org/content/32/4/571 .
Features
- automatic construction of protein-protein interaction networks
Audience
Healthcare Industry, Science/Research
User interface
Java Swing, Console/Terminal, Command-line
Programming Language
Java
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/ppixpress/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.