This is the Linux app named PPSeq: Parallel NGS Analysis whose latest release can be downloaded as ppseq-1.3-Linux-x86_64-pthread.gz. It can be run online in the free hosting provider OnWorks for workstations.
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PPSeq: Parallel NGS Analysis
DESCRIPTION
High-throughput next generation sequencing (NGS) technology has quickly emerged as a powerful tool in many aspects of biomedical research. However, along with its rapid development, the data magnitude and analysis complexity for NGS far exceed the capacity and capability of traditional small-scale computing facilities, such as multithreading algorithms on standalone workstations. To address this issue, here we present a solution using the ever-increasing supply of processing power by massive parallel processing (MPP) systems.Features
- ppalgn - aligning sequencing reads to long reference sequences
- ppbwt - building a FM-index from a set of DNA sequences
Audience
Education, Engineering, Healthcare Industry, Information Technology, Non-Profit Organizations, Science/Research
User interface
Command-line
Programming Language
C++
This is an application that can also be fetched from https://sourceforge.net/projects/ppseq/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.