This is the Linux app named QSdpR to run in Linux online whose latest release can be downloaded as QSdpR_v3.2.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
Download and run online this app named QSdpR to run in Linux online with OnWorks for free.
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- 1. Downloaded this application in your PC.
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QSdpR to run in Linux online
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DESCRIPTION
This is a viral quasispecies reconstruction software for quasispecies assembly problem on mRNA viruses, which is based on a correlation clustering approach and uses semidefinite optimization framework. The software accepts a reference genome, a NGS read set aligned to this reference and set of SNP locations in the form of a vcf file and outputs an optimal set of reconstructed species genomes which describes the underlying viral population.Features
- Quasispecies
- mRNA virus
- Clustering
- Semidefinite program
- HIV-1 virus
Audience
Science/Research
Programming Language
Unix Shell, Python, C
This is an application that can also be fetched from https://sourceforge.net/projects/qsdpr/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
