This is the Linux app named QUASR whose latest release can be downloaded as QUASR_v6.08.tar. It can be run online in the free hosting provider OnWorks for workstations.
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QUASR
DESCRIPTION
QUASR is a lightweight pipeline written to process and analyse next-generation sequencing (NGS) data from Illumina, 454, and Ion Torrent platforms. Although originally written for viral data, it is generic enough to work on any NGS dataset. Functions include:
duplicate removal
demultiplexing
primer-removal
quality-assurance (QA) graphing
quality control (QC)
consensus-generation
minority-variant determination
minority-variant graphing
The main current version is 6.X, which is written in Python3. 7.X is my rewrite in Java, but is still work in progress. Both are written to be as lightweight as possible so they can run with minimal memory-requirements on a desktop or laptop as well as on a compute cluster.
If you have any problems with QUASR, please do contact me at the email address provided in the README.
Audience
Science/Research
User interface
Command-line
Programming Language
Python
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/quasr/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
