This is the Linux app named QUASR to run in Linux online whose latest release can be downloaded as QUASR_v7.01.tar. It can be run online in the free hosting provider OnWorks for workstations.
Download and run online this app named QUASR to run in Linux online with OnWorks for free.
Follow these instructions in order to run this app:
- 1. Downloaded this application in your PC.
- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
- 3. Upload this application in such filemanager.
- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.
- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
- 6. Download the application, install it and run it.
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QUASR to run in Linux online
DESCRIPTION
QUASR is a lightweight pipeline written to process and analyse next-generation sequencing (NGS) data from Illumina, 454, and Ion Torrent platforms. Although originally written for viral data, it is generic enough to work on any NGS dataset. Functions include:duplicate removal
demultiplexing
primer-removal
quality-assurance (QA) graphing
quality control (QC)
consensus-generation
minority-variant determination
minority-variant graphing
The main current version is 6.X, which is written in Python3. 7.X is my rewrite in Java, but is still work in progress. Both are written to be as lightweight as possible so they can run with minimal memory-requirements on a desktop or laptop as well as on a compute cluster.
If you have any problems with QUASR, please do contact me at the email address provided in the README.
Audience
Science/Research
User interface
Command-line
Programming Language
Python
This is an application that can also be fetched from https://sourceforge.net/projects/quasr/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
