This is the Linux app named rafah whose latest release can be downloaded as RaFAH.pl. It can be run online in the free hosting provider OnWorks for workstations.
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rafah
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DESCRIPTION
One fundamental question when trying to describe viruses of Bacteria and Archaea is: Which host do they infect? To tackle this issue we developed a machine-learning approach named Random Forest Assignment of Hosts (RaFAH), which outperformed other methods for virus-host prediction. Our rationale was that the machine could learn the associations between genes and hosts much more efficiently than a human, while also using the information contained in the hypothetical proteins. Random forest models were built using the Ranger package in R.
Features
- Random Forest
- R
- Ranger
- Host Prediction
- perl
This is an application that can also be fetched from https://sourceforge.net/projects/rafah/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
