This is the Linux app named RaTrav to run in Linux online whose latest release can be downloaded as RaTrav.13.09.16.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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RaTrav to run in Linux online
DESCRIPTION:
RaTrav tool was designed to support computational biology studies where mean first-passage times (MFPTs) between initial and single or multiple final states in network-like systems are used. The tool approves arbitrary networks (graphs) where a dynamics of the Markovian type takes place. Two methods are made available for which their efficiency is strongly dependent on the topology of the defined network: the combinatorial Hill technique and the Monte Carlo simulation method.References:
M. Torchala, P. Chelminiak, M. Kurzynski and P. A. Bates, 'RaTrav: a tool for calculating mean first-passage times on biochemical networks', BMC Syst. Biol. 7, 130 (2013).
M. Torchala, P. Chelminiak and P. A. Bates, 'Mean first-passage time calculations: comparison of the deterministic Hill's algorithm with Monte Carlo simulations', Eur. Phys. J. B 85, 116 (2012).
Audience
Science/Research
User interface
Console/Terminal
Programming Language
C++
This is an application that can also be fetched from https://sourceforge.net/projects/ratrav/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.