This is the Linux app named raxmlGUI whose latest release can be downloaded as raxmlGUI1.5b3.zip. It can be run online in the free hosting provider OnWorks for workstations.
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raxmlGUI
DESCRIPTION
RELEASE NOTE: Get raxmlGUI 2.0 at the NEW PROJECT LOCATION: https://antonellilab.github.io/raxmlGUI/raxmlGUI is a graphical user interface to RAxML, one of the most popular and widely used software for phylogenetic inference using maximum likelihood.
A userfriendly graphical front-end for phylogenetic analyses using RAxML (Stamatakis, 2006). Please cite: Silvestro, Michalak (2012) - raxmlGUI: a graphical front-end for RAxML. Organisms Diversity and Evolution 12, 335-337. DOI: 10.1007/s13127-011-0056-0
Features
- *NEW VERSION 2.0 NOW AVAILABLE: https://antonellilab.github.io/raxmlGUI/*
- *version 1.5* adds the possibility to run analyses through CIPRES Science Gateway
- The GUI includes RAxML executables
- Multiplatform compatibility (Mac OS, Windows, Linux)
- Requires Python 2.6, 2.7
- Intuitive interface for data partitioning, and outgroup selection
- Model selection for DNA, amino acid, binary, and multistate alignments
- Automatic conversion NEXUS to PHYLIP (and vice versa)
- Import FASTA files
- Ancestral state reconstruction
- "Bootstopping" function (Pattengale et al. 2010)
- Interactive exclusion of sites
- Combining multiple alignments with automatic partitioning
- Interactive definition of topological constraints
- Robinson-Foulds pairwise distances
- Per-site likelihoods
Audience
Science/Research
User interface
Tk
Programming Language
Python
This is an application that can also be fetched from https://sourceforge.net/projects/raxmlgui/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
