This is the Linux app named RGAAT to run in Linux online whose latest release can be downloaded as RGAAT.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
Download and run online this app named RGAAT to run in Linux online with OnWorks for free.
Follow these instructions in order to run this app:
- 1. Downloaded this application in your PC.
- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
- 3. Upload this application in such filemanager.
- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.
- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
- 6. Download the application, install it and run it.
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RGAAT to run in Linux online
DESCRIPTION
This program can assemble and/or annotate genome for new genome and known genome upgrade using sequence alignment file (SAM or BAM format), sequence variant file (VCF format or five coloum table (tab-delimited, including chromosome, position, id, reference allele and alternative allele)) or new genome sequence file (FASTA format) based on reference genome sequence file (FASTA format) and annotation file (TBL, GTF, GFF, GFF3 or BED format).Features
- sequence variation identification
- genome consensus sequence building
- genome modification
- genome comparison
- genome annotation
- building genome coordinate conversion between different genome assembly versions
Audience
Science/Research
Programming Language
Perl
This is an application that can also be fetched from https://sourceforge.net/projects/rgaat/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
