This is the Linux app named SASHIMI whose latest release can be downloaded as TPP_Setup_6.3.3.exe. It can be run online in the free hosting provider OnWorks for workstations.
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SASHIMI
DESCRIPTION
The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
Features
- Database Search Engines (comet etc.)
- SpecraST (Spectrum Library Search Engine)
- Open-mass Search (Magnum etc.)
- Kojak (Crosslinking Search)
- DDA Analysis
- DISCo (DIA Analysis)
- reSpect (Chimeric Spectrum Analysis)
- MS1 and MS2 Quantitation Labelled and Unlabelled
- Decoy Database Generation
- PeptideProphet (PSM Level Validation)
- iProphet (Peptide Level Validation)
- PTMProphet (Post-Translational Modification Validation)
- Protein Level Validation
- Spectrum Library Generation
- Data Visualization Tools
- Retention Time Cataloging and Prediction
Audience
Science/Research
User interface
Web-based, Command-line
Programming Language
Python, Perl, C++, C, JavaScript, Java
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/sashimi/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
