This is the Linux app named scFvMiner to run in Linux online whose latest release can be downloaded as scFvMiner.zip. It can be run online in the free hosting provider OnWorks for workstations.
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scFvMiner to run in Linux online
DESCRIPTION:
These scripts written in java can be used for deep sequencing analysis of the scFv antibodies from a synthetic antibody library and yields complete sequence information on the randomized areas of antibodies enriched from the library by phage display. The methods are descriped in Lövgen, J., Pursiheimo, J.P., Pyykkö, M., Salmi, J. & Lamminmäki, U. (2016) Next generation sequencing of all variable loops of synthetic single framework scFv – application in anti-HDL antibody selections. New Biotechnology 33:790-796.Features
- next generation sequencing
- CDR loops
Programming Language
Java
This is an application that can also be fetched from https://sourceforge.net/projects/scfvminer/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.