This is the Linux app named SmithWaterman to run in Linux online whose latest release can be downloaded as smith_waterman-0.2.3.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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SmithWaterman to run in Linux online
DESCRIPTION
MOVED TO GITHUB: https://github.com/noporpoise/seq-alignAn implementation of the Smith-Waterman local sequence alignment algorithm.
See our sister project global alignment using Needleman-Wunsch:
http://sourceforge.net/projects/needlemanwunsch/
Features
- Affine gap penalties
- Coloured ouput
- Reads FASTA, FASTQ and plain sequence files (inc. gzip'ed files)
- Preset DNA/Protein substitution matrices (PAM/BLOSUM etc)
- Can load penalty substitution matrices
- Portable C code that can be used in other bioinformatics projects
Audience
Science/Research, Education
User interface
Console/Terminal, Command-line
Programming Language
C++, C
This is an application that can also be fetched from https://sourceforge.net/projects/smithwaterman/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
