This is the Linux app named SOAPdenovo2 whose latest release can be downloaded as SOAPdenovo2-src-r240.tgz. It can be run online in the free hosting provider OnWorks for workstations.
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SOAPdenovo2
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DESCRIPTION
What's next of SOAPdenovo2:
MEGAHIT is the formal successor of SOAPdenovo2
MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
http://www.ncbi.nlm.nih.gov/pubmed/25609793
https://github.com/voutcn/megahit
Latest Code on GitHub:
https://github.com/aquaskyline/SOAPdenovo2
SOAPdenovo is a novel short-read assembly method that can build a de novo draft assembly for human-sized genomes. The program is specially designed to assemble Illumina short reads. It creates new opportunities for building reference sequences and carrying out accurate analyses of unexplored genomes in a cost effective way. SOAPdenovo2 is the successor of SOAPdenovo. Cite the paper published in GigaScience (see website below) if you want to cite SOAPdenovo2.
Audience
Science/Research, Developers
User interface
Command-line
Programming Language
C++, C
Database Environment
Flat-file
This is an application that can also be fetched from https://sourceforge.net/projects/soapdenovo2/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
