This is the Linux app named SoftSV to run in Linux online whose latest release can be downloaded as SoftSV_1.4.2.zip. It can be run online in the free hosting provider OnWorks for workstations.
Download and run online this app named SoftSV to run in Linux online with OnWorks for free.
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SoftSV to run in Linux online
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DESCRIPTION
SoftSV is a tool for the detection of small and large deletions, inversions, tandem duplications and translocations from paired-end sequencing data. It uses aberrant paired-end mappings to determine approximative breakpoint regions and refines the breakpoints by analysing soft-clipped sequences for potential split-reads.For more information about the algorithm and an evaluation, have a look at this publication:
"Robust and exact structural variation detection with paired-end and soft-clipped alignments: SoftSV compared with eight algorithms"
(PMID 25998133)
Please cite this artilce if you used SoftSV in your publication.
Audience
Science/Research
User interface
Console/Terminal
Programming Language
C++
This is an application that can also be fetched from https://sourceforge.net/projects/softsv/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
