This is the Linux app named StatAlign whose latest release can be downloaded as StatAlign-v2.1.zip. It can be run online in the free hosting provider OnWorks for workstations.
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StatAlign
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DESCRIPTION
StatAlign is an extendable software package for Bayesian analysis of Protein, DNA and RNA sequences. Multiple alignments, phylogenetic trees and evolutionary parameters are co-estimated in a Markov Chain Monte Carlo framework, allowing for reliable measurement of the accuracy of the results.
This approach eliminates common artifacts that traditional methods suffer from, at the cost of increased computational time. These artifacts include the dependency of the constructed phylogeny on a single (probably suboptimal) alignment and bias towards the guide tree upon which the alignment relies.
The models behind the analysis permit the comparison of evolutionarily distant sequences: the TKF92 insertion-deletion model can be coupled to an arbitrary substitution model. A broad range of models for nucleotide and amino acid data is included in the package and the plug-in management system ensures that new models can be easily added.
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This is an application that can also be fetched from https://sourceforge.net/projects/statalign/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
