This is the Linux app named TransGeneScan to run in Linux online whose latest release can be downloaded as TransGeneScan1.2.1.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
Download and run online this app named TransGeneScan to run in Linux online with OnWorks for free.
Follow these instructions in order to run this app:
- 1. Downloaded this application in your PC.
- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
- 3. Upload this application in such filemanager.
- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.
- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
- 6. Download the application, install it and run it.
TransGeneScan to run in Linux online
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DESCRIPTION
NOTE: TransGeneScan is migrated to Github (https://github.com/COL-IU/TransGeneScan).TransGeneScan is no longer maintained in SourceForge. Please find the latest version in Github.
TransGeneScan is a gene finding tool for Metatranscriptomic sequences. TransGeneScan incorporates strand-speci c hidden states, representing coding sequences in sense and anti-sense strands on transcripts in a Hidden Markov Model similar to the one used in FragGeneScan (http://fraggenescan.sourceforge.net/), and can predict a sense transcript containing one or multiple genes (in an operon) or an antisense transcript.
Audience
Information Technology, Healthcare Industry
User interface
Console/Terminal
Programming Language
Perl, C
This is an application that can also be fetched from https://sourceforge.net/projects/transgenescan/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
