This is the Linux app named Trowel - Sequencing Error Corrector whose latest release can be downloaded as trowel.0.2.0.4.linux.64. It can be run online in the free hosting provider OnWorks for workstations.
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Trowel - Sequencing Error Corrector
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DESCRIPTION
Trowel is an error correction module for Illumina sequencing reads, which is based on the k-mer spectrum approach. This tool is the first tool that uses a quality threshold instead of a coverage cutoff in order to extract trusted k-mers. This tool guarantees high accuracy and speed.
This tool has been developed since 21. Jan. 2013 by Euncheon Lim in Prof. Dr. Detlef Weigel's Lab in Max-Planck Institute for Developmental Biology.
First of all, you have to install the exact version of boost(>=1.53.0), google sparse hash(>=2.0.2), GCC(>=4.6), autoconf(=2.69), and automake(=1.13).
Audience
Science/Research
User interface
Command-line
Programming Language
C++
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/trowel-ec/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
