This is the Linux app named VIGOR3 whose latest release can be downloaded as VIGOR3.tgz. It can be run online in the free hosting provider OnWorks for workstations.
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VIGOR3
DESCRIPTION
VIGOR is a tool for annotating coding genes in viral genomes. It was developed by Jeffrey Hoover and Shiliang Wang for The JCVI Genomic Sequencing Center for Infectious Diseases (GSCID).
http://www.biomedcentral.com/content/pdf/1471-2105-11-451.pdf
contact:
Jeff Hoover
301-540-7858
[email protected]
Features
- understands RNA editing, ribosomal slippage, stop codon read-thru & alternate start codons
- annotates mature peptides on polyproteins
- handles spliced, overlapping, and embedded genes
- handles circular, partial, and draft (gapped) genomes
- diagnoses frameshifts in assembly
- includes reference datasets for more than 50 species
- includes tools for creating new reference datasets
Audience
Science/Research
User interface
Command-line
Programming Language
Perl
Database Environment
SQLite
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/vigor3/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
