This is the Windows app named 3DScape whose latest release can be downloaded as 3DScapeCS.jar. It can be run online in the free hosting provider OnWorks for workstations.
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Wine is a way to run Windows software on Linux, but with no Windows required. Wine is an open-source Windows compatibility layer that can run Windows programs directly on any Linux desktop. Essentially, Wine is trying to re-implement enough of Windows from scratch so that it can run all those Windows applications without actually needing Windows.
3DScape
DESCRIPTION:
3DScape is the first plug-in which enables three-dimensional network visualization in Cytoscape. 3DScape features include accessing graph appearance, layout algorithm, and animation effects on a series of expression data.Features
- Convert Cytoscape network view to a 3D, retaining the color, size, and shape of nodes.
- Three-dimensional layout using Fruchterman-Reingold (Fruchterman et al., 1991), Fast Multipole Multilevel Method (FM3) (Hachul et al., 2004), and Span Tree algorithms.
- Network edges can be rendered in gradient heat map colors, with glowing effect.
- Animation loops from time points of a series of expression data.
This is an application that can also be fetched from https://sourceforge.net/projects/scape3d/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.