This is the Windows app named MToolBox whose latest release can be downloaded as MToolBox.v0.3.3.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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MToolBox
DESCRIPTION:
MToolBox is a highly automated bioinformatics pipeline to reconstruct and analyze human mitochondrial DNA from high throughput sequencing data. MToolBox includes an updated computational strategy to assemble mitochondrial genomes from Whole Exome and/or Genome Sequencing (PMID: 22669646) and an improved fragment-classify tool (PMID:22139932) for haplogroup assignment, functional and prioritization analysis of mitochondrial variants. MToolBox provides pathogenicity scores, profiles of genome variability and disease-associations for mitochondrial variants. MToolBox provides also a Variant Call Format file (version 4.0) featuring, for the first time, allele-specific heteroplasmy.Please, check out the most recent updates of the source code with the Github repository of MToolBox:
https://github.com/mitoNGS/MToolBox
or visit the Web version of MToolBox @ MSeqDR:
https://mseqdr.org/mtoolbox.php
Programming Language
Unix Shell, Python
This is an application that can also be fetched from https://sourceforge.net/projects/mtoolbox/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.