This is the Windows app named PBSuite to run in Windows online over Linux online whose latest release can be downloaded as PBSuite_15.8.24.tgz. It can be run online in the free hosting provider OnWorks for workstations.
Download and run online this app named PBSuite to run in Windows online over Linux online with OnWorks for free.
Follow these instructions in order to run this app:
- 1. Downloaded this application in your PC.
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- 3. Upload this application in such filemanager.
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- 5. From the OnWorks Windows OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
- 6. Download the application and install it.
- 7. Download Wine from your Linux distributions software repositories. Once installed, you can then double-click the app to run them with Wine. You can also try PlayOnLinux, a fancy interface over Wine that will help you install popular Windows programs and games.
Wine is a way to run Windows software on Linux, but with no Windows required. Wine is an open-source Windows compatibility layer that can run Windows programs directly on any Linux desktop. Essentially, Wine is trying to re-implement enough of Windows from scratch so that it can run all those Windows applications without actually needing Windows.
SCREENSHOTS:
PBSuite to run in Windows online over Linux online
DESCRIPTION:
This currently hosts two projects created and maintained by Adam English.PBJelly - the genome upgrading tool.
PBHoney - the structural variation discovery tool
Both are contained within the PBSuite code found in downloads.
----- PBJelly -----
Read The Paper
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0047768
PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS reads or long 454 reads in fasta format) to high-confidence draft assembles. PBJelly fills or reduces as many captured gaps as possible to produce upgraded draft genomes.
----- PBHoney -----
Read The Paper
http://www.biomedcentral.com/1471-2105/15/180/abstract
PBHoney is an implementation of two variant-identification approaches designed to exploit the high mappability of long reads (i.e., greater than 10,000 bp). PBHoney considers both intra-read discordance and soft-clipped tails of long reads to identify structural variants.
Features
- Genome Assembly
- Genome Upgrade
- Structural Variation
- Assembly Evaluation
Audience
Science/Research
Programming Language
Python
This is an application that can also be fetched from https://sourceforge.net/projects/pb-jelly/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.