This is the Windows app named RAPSearch2 whose latest release can be downloaded as RAPSearch2.24_64bits.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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RAPSearch2
DESCRIPTION:
RAPSearch2 is a tool for fast protein similarity searches. RAPSearch2 searches short DNA sequences (reads) or protein sequences against protein database, achieving >100 times speedup as compared to BLASTX (for reads of ~100bp), or >1000 times speedup over BLASTX in the accelerating mode (option "-a"). RAPSearch2 utilizes reduced amino acid alphabet and flexible seed so that seeds of various lengths with mismatches can be identified quickly by hashing.This is an application that can also be fetched from https://sourceforge.net/projects/rapsearch2/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.