This is the Windows app named REDO to run in Windows online over Linux online whose latest release can be downloaded as REDO.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
Download and run online this app named REDO to run in Windows online over Linux online with OnWorks for free.
Follow these instructions in order to run this app:
- 1. Downloaded this application in your PC.
- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
- 3. Upload this application in such filemanager.
- 4. Start any OS OnWorks online emulator from this website, but better Windows online emulator.
- 5. From the OnWorks Windows OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
- 6. Download the application and install it.
- 7. Download Wine from your Linux distributions software repositories. Once installed, you can then double-click the app to run them with Wine. You can also try PlayOnLinux, a fancy interface over Wine that will help you install popular Windows programs and games.
Wine is a way to run Windows software on Linux, but with no Windows required. Wine is an open-source Windows compatibility layer that can run Windows programs directly on any Linux desktop. Essentially, Wine is trying to re-implement enough of Windows from scratch so that it can run all those Windows applications without actually needing Windows.
SCREENSHOTS
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REDO to run in Windows online over Linux online
DESCRIPTION
REDO is a comprehensive application tool for identifying RNA editing events in organelles based on variant call results (VCF files). It is a suite of Perl scripts and can work easily and directly in any operating system installed Perl and R Environment. The stringent rule depended filters and statistical filters are used in REDO for reducing false positive rate. It can provide detailed annotations, statistics and figures for RNA editing sites. REDO also can detect RNA editing events in multiple samples simultaneously and identify differential proportion of RNA editing events in different samples. Moreover, the genome variation can be easily removed by a subprogram fish.pl in our package.Features
- The false positive are filtered by rule-depended filters and statistics filters
- The detailed annotations are provided, including gene name, nucleotide and amino acid position in gene, codon phase, ref and editing alleles, ref and editing codons, ref and editing amino acids, editing proportion, gene function, etc.
- Useful statistics are also provided by REDO, such as the statistics for RNA editing types, hydrophobic/hydrophilic changes, silent/non-silent changes and codon phases of editing sites.
- For illustrating the attributes of RNA editing sites, 16 figures are produced using R program for each sample.
- REDO can detect RNA editing events in multiple samples simultaneously.
- The differential proportion of RNA editing events in multiple samples can be identified.
- The subprogram can be used to process the REDO result tables easily and quickly.
Audience
Science/Research
Programming Language
Perl
This is an application that can also be fetched from https://sourceforge.net/projects/redo/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
