This is the Windows app named selectseq to run in Windows online over Linux online whose latest release can be downloaded as selectseq_old_1.3.6. It can be run online in the free hosting provider OnWorks for workstations.
Download and run online this app named selectseq to run in Windows online over Linux online with OnWorks for free.
Follow these instructions in order to run this app:
- 1. Downloaded this application in your PC.
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- 3. Upload this application in such filemanager.
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- 5. From the OnWorks Windows OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
- 6. Download the application and install it.
- 7. Download Wine from your Linux distributions software repositories. Once installed, you can then double-click the app to run them with Wine. You can also try PlayOnLinux, a fancy interface over Wine that will help you install popular Windows programs and games.
Wine is a way to run Windows software on Linux, but with no Windows required. Wine is an open-source Windows compatibility layer that can run Windows programs directly on any Linux desktop. Essentially, Wine is trying to re-implement enough of Windows from scratch so that it can run all those Windows applications without actually needing Windows.
selectseq to run in Windows online over Linux online
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DESCRIPTION
A command-line utility to manipulate biological sequences from a FASTA or FASTQ file. It can, given a list of identifiers, get only a subset of the sequences (or their complement, i.e., sequences NOT in the list). Can also get sequence number N only. Compressed sequences files are supported if readable by zcat.Features
- collect only some sequences out of a large FASTA or FASTQ file
- get sequence number N only, regardless of ID
- complement mode: return all sequences that are NOT in the list of IDs
- "matching" mode: choose which part (between | characters) of the ID should match
- sequence names provided one per line in a text file (first word in line used, or whatever is given to the -k option)
- the > and @ symbols are ignored if present in the beginning of IDs in the list (useful if using FASTA or FASTQ identifiers)
- if only one sequence is needed, its ID can be given directly to the -l option (no need of a file)
- add a suffix to IDs before searching (useful when IDs come from proteins that have _1 in the ID, but genes do not)
- compressed sequence database files (-s) are supported
- quite mode, output only important warnings and errors
Audience
Science/Research
User interface
Command-line
Programming Language
Perl
This is an application that can also be fetched from https://sourceforge.net/projects/selectseq/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
