This is the Windows app named Seqshell whose latest release can be downloaded as start.jar. It can be run online in the free hosting provider OnWorks for workstations.
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- 7. Download Wine from your Linux distributions software repositories. Once installed, you can then double-click the app to run them with Wine. You can also try PlayOnLinux, a fancy interface over Wine that will help you install popular Windows programs and games.
Wine is a way to run Windows software on Linux, but with no Windows required. Wine is an open-source Windows compatibility layer that can run Windows programs directly on any Linux desktop. Essentially, Wine is trying to re-implement enough of Windows from scratch so that it can run all those Windows applications without actually needing Windows.
SCREENSHOTS
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Seqshell
DESCRIPTION
Combines the Tophat and Cuffdiff functions in one GUI interface. tophat and cuffdiff are required to be pre-installed in the system.
By modifying the program, it can be used to execute any command line programs even R packages since R can also be run from commandlines.
New functions:
Batch processing function for Tophat. You can now execute as many mapping jobs as you want with tophat. This program will save the output into separate folders.
An alert email will be sent to your email address when the job is done. (You will need to modify the source code to change the content to meet your special needs)
Run-time information will be displayed in a JAVA output window.
Audience
Developers, End Users/Desktop
User interface
Java Swing
Programming Language
Java
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/seqshell/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
