This is the Windows app named SPiCEv2.1 whose latest release can be downloaded as SPiCEtoLinux.zip. It can be run online in the free hosting provider OnWorks for workstations.
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Wine is a way to run Windows software on Linux, but with no Windows required. Wine is an open-source Windows compatibility layer that can run Windows programs directly on any Linux desktop. Essentially, Wine is trying to re-implement enough of Windows from scratch so that it can run all those Windows applications without actually needing Windows.
SCREENSHOTS
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SPiCEv2.1
DESCRIPTION
SPiCEv2.1 is a tool to predict the splice alteration of variant occuring in consensus splice site (Donor: -3; +6 and Acceptor: -12; +2).You can also download SPiCE for Win 64 bits: https://sourceforge.net/projects/spicev2-1/files/SPiCEInstall64bit.exe/download
You can also download SPiCE for Win 32 bits: https://sourceforge.net/projects/spicev2-1/files/SPiCEInstall32bit.exe/download
You can also download SPiCE for linux: https://sourceforge.net/projects/spicev2-1/files/SPiCEtoLinux.zip/download
If you have questions, please contact me to: [email protected] or [email protected]
v2.1.5 (05/2019) + corr (01/2020):
Fix bug for linux version
v2.1.4 (03/2019):
Proxy management (only for Windows version)
v2.1.3 (07/2018):
correction bug for first 3' ss
import vcf file
v2.1.2 (06/2018):
Import duplication
Simplify import of deletion with one nucleotide
Use tryCatch
Improving web api connection check
Features
- Prediction
- Variants
- splice
- RNA
- Consensus region
Audience
Science/Research
User interface
Tk
Programming Language
S/R
This is an application that can also be fetched from https://sourceforge.net/projects/spicev2-1/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
