EnglishFrenchSpanish

OnWorks favicon

iMSAT download for Linux

Free download iMSAT Linux app to run online in Ubuntu online, Fedora online or Debian online

This is the Linux app named iMSAT whose latest release can be downloaded as SSRs.zip. It can be run online in the free hosting provider OnWorks for workstations.

Download and run online this app named iMSAT with OnWorks for free.

Follow these instructions in order to run this app:

- 1. Downloaded this application in your PC.

- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 3. Upload this application in such filemanager.

- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.

- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 6. Download the application, install it and run it.

SCREENSHOTS

Ad


iMSAT


DESCRIPTION

iMSAT represents a full update of the vcf2MSAT program. This command line python program allows for a user to use the polymorphism data generated using SAM- and BAM-tools and a .fasta alignment file to search for polymorphic microsatellite markers (MSATs or STRs). By identifying polymorphic makers, rather than simple repeat regions as previous programs have done, iMSAT greatly increases the speed at which polymorphic MSATs that can be identified -- saving researchers precious time and money. Visit http://www.biomedcentral.com/1471-2164/15/858/abstract for the pdf article describing the utility of iMSAT and if you use the program please cite this article as: Andersen and Mills: iMSAT: a novel approach to the development of microsatellite loci using barcoded Illumina libraries. BMC Genomics 2014 15:858.



Features

  • Polymorphic Microsatellite Identification
  • Illumina Sequencing
  • Genomic Analysis


Audience

Science/Research


User interface

Command-line


Programming Language

Python


Categories

Bio-Informatics

This is an application that can also be fetched from https://sourceforge.net/projects/imsat/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.


Free Servers & Workstations

Download Windows & Linux apps

  • 1
    MSYS2
    MSYS2
    MSYS2 is a collection of tools and
    libraries providing you with an
    easy-to-use environment for building,
    installing and running native Windows
    software. It con...
    Download MSYS2
  • 2
    libjpeg-turbo
    libjpeg-turbo
    libjpeg-turbo is a JPEG image codec
    that uses SIMD instructions (MMX, SSE2,
    NEON, AltiVec) to accelerate baseline
    JPEG compression and decompression on
    x86, x8...
    Download libjpeg-turbo
  • 3
    Xtreme Download Manager
    Xtreme Download Manager
    The project has a new home now:
    https://xtremedownloadmanager.com/ For
    developers:
    https://github.com/subhra74/xdm Xtreme
    Download Manager is a powerful tool t...
    Download Xtreme Download Manager
  • 4
    TTGO VGA32 Lite
    TTGO VGA32 Lite
    Features:4:3 and 16:9 low resolution
    VGA outputPS/2 keyboard and mouse
    inputText-based user interface (TUI)
    with dialog managerPartial Unicode
    supportSlave dis...
    Download TTGO VGA32 Lite
  • 5
    Clover EFI bootloader
    Clover EFI bootloader
    Project has moved to
    https://github.com/CloverHackyColor/CloverBootloader..
    Features:Boot macOS, Windows, and Linux
    in UEFI or legacy mode on Mac or PC with
    UE...
    Download Clover EFI bootloader
  • 6
    unitedrpms
    unitedrpms
    Join us in Gitter!
    https://gitter.im/unitedrpms-people/Lobby
    Enable the URPMS repository in your
    system -
    https://github.com/UnitedRPMs/unitedrpms.github.io/bl...
    Download unitedrpms
  • More »

Linux commands

Ad