fastaq-caf_to_fastq - Online in the Cloud

PROGRAM:

NAME

fastaq_caf_to_fastq - Converts a CAF file to FASTQ format

DESCRIPTION

usage: fastaq_caf_to_fastq [options] <infile> <outfile>

Converts CAF file to FASTQ format

positional arguments:
infile Name of input CAF file.

outfile
Name of output FASTQ file

optional arguments:
-h, --help
show this help message and exit

-c, --clip
Use clipping info to clip reads, if present in the input CAF file (as lines of the
form "Clipping QUAL start end"). Default is to not clip

-l INT, --min_length INT
Minimum length of sequence to output [1]

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