This is the command cmtk-destripe that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
destripe - Destripe volume image data.
SYNOPSIS
destripe InputImage OutputImage
DESCRIPTION
This program corrects stripe artifacts in acquired image stacks which can result from
between-slice intensity scale differences.
OPTIONS
Global Toolkit Options (these are shared by all CMTK tools)
--help
Write list of basic command line options to standard output.
--help-all
Write complete list of basic and advanced command line options to standard output.
--wiki
Write list of command line options to standard output in MediaWiki markup.
--man
Write man page source in 'nroff' markup to standard output.
--version
Write toolkit version to standard output.
--echo
Write the current command line to standard output.
--verbose-level <integer>
Set verbosity level.
--verbose, -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).
--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).
Slice Orientation
--slice-axis
Define slice direction axis: this is the through-slice direction of the acquisition.
Supported values: "guess-from-input", "axial", "sagittal", "coronal", "slice-x",
"slice-y", "slice-z", where the default is "guess-from-input", or use one of the
following:
--guess-from-input
Guess from input image [This is the default]
--axial, -a
Sliced axial images
--sagittal, -s
Sliced sagittal images
--coronal, -c
Sliced coronal images
--slice-x, -x
Sliced along x axis
--slice-y, -y
Sliced along y axis
--slice-z, -z
Sliced along z axis
--kernel-fwhm <double>
Gaussian kernel full width at half maximum (FWHM) in units of slice indexes.
[Default: 1]
--kernel-radius <integer>
Truncate kernel radius to this many samples. By default, kernel width is determined
to limit approximation error. [Default: 0]
--write-float
Write output image in floating point representation. By default, write using input
image pixel data type.
AUTHORS
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R.
Maurer, Daniel B. Russakoff, and Yaroslav Halchenko
Use cmtk-destripe online using onworks.net services
