This is the command samtom4 that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
samtom4 - Convert a SAM file generated by blasr(1) to M4 format
SYNOPSIS
samtom4 in.sam reference.fasta out.m4 [options]
OPTIONS
in.sam Input SAM file, which is produced by blasr.
reference.fasta
Reference used to generate file.sam.
out.m4 Output in blasr(1) M4 format.
-header
Print M4 header.
-useShortRefName
Use abbreviated reference names obtained from file.sam instead of using full names
from reference.fasta.
Use samtom4 online using onworks.net services
